SNP Detail For rs11078884
1.Mapping Information
Human SNP ID rs11078884
Human chromosome chr17
Human SNP position 2241899
Pig chromosome chr12
Pig SNP position 50192019
2.Annotation Information
PubMed ID23319000
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23319000
StudyGenome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.
Disease/TraitMetabolite levels (5-HIAA)
Initial sampleup to 398 European ancestry individuals
Replication sampleNA
Region17p13.3
Chromosome idchr17
Chromosome position2241899
Reported geneSMG6, SRR, AJ276246
Mapped geneSMG6
Upstream gene id
Downstream gene id
SNP gene ids23293
Upstream gene distance
Downstream gene distance
SNP risk allelers11078884-C
SNPsrs11078884
Merged0
SNP id current11078884
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.2234
%95 Ciunit increase
PlatformIllumina [5767231] (imputed)
CNVN
Mapped trait5-HIAA measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005132
Study accessionGCST001820