SNP Detail For rs11074779
1.Mapping Information
Human SNP ID rs11074779
Human chromosome chr16
Human SNP position 26440122
Pig chromosome chr3
Pig SNP position 20505854
2.Annotation Information
PubMed ID25648963
JournalBiol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25648963
StudyGenome-wide Studies of Verbal Declarative Memory in Nondemented Older People: The Cohorts for Heart and Aging Research in Genomic Epidemiology Consortium.
Disease/TraitVerbal declarative memory
Initial sampleUp to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals
Replication sampleUp to 10,617 European ancestry individuals, up to 3,811 African American individuals
Region16p12.1
Chromosome idchr16
Chromosome position26440122
Reported geneHS3ST4, C16orf82
Mapped geneLOC102723536 - LOC105371152
Upstream gene id102723536
Downstream gene id105371152
SNP gene ids
Upstream gene distance76065
Downstream gene distance144650
SNP risk allelers11074779-T
SNPsrs11074779
Merged0
SNP id current11074779
Contextintergenic_variant
Intergenic1
Allele frequency0.19
P value0.00000003
Pvalue mlog7.52287874528033
P value text(RAVLT-dr, EA)
Or beta0.4033
%95 Ci[0.26-0.55] unit increase
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitword list delayed recall measurement, memory performance
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006805, http://www.ebi.ac.uk/efo/EFO_0004874
Study accessionGCST002701
PubMed ID25648963
JournalBiol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25648963
StudyGenome-wide Studies of Verbal Declarative Memory in Nondemented Older People: The Cohorts for Heart and Aging Research in Genomic Epidemiology Consortium.
Disease/TraitVerbal declarative memory
Initial sampleUp to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals
Replication sampleUp to 10,617 European ancestry individuals, up to 3,811 African American individuals
Region16p12.1
Chromosome idchr16
Chromosome position26440122
Reported geneHS3ST4, C16orf82
Mapped geneLOC102723536 - LOC105371152
Upstream gene id102723536
Downstream gene id105371152
SNP gene ids
Upstream gene distance76065
Downstream gene distance144650
SNP risk allelers11074779-T
SNPsrs11074779
Merged0
SNP id current11074779
Contextintergenic_variant
Intergenic1
Allele frequency0.19
P value0.0000001
Pvalue mlog7
P value text(RAVLT-dr)
Or beta0.3757
%95 Ci[0.24-0.52] unit increase
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitword list delayed recall measurement, memory performance
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006805, http://www.ebi.ac.uk/efo/EFO_0004874
Study accessionGCST002701