SNP Detail For rs11071200
1.Mapping Information
Human SNP ID rs11071200
Human chromosome chr15
Human SNP position 55657884
Pig chromosome chr1
Pig SNP position 128713669
2.Annotation Information
PubMed ID23648065
JournalCancer Sci
Linkwww.ncbi.nlm.nih.gov/pubmed/23648065
StudyGenome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.
Disease/TraitAdverse response to chemotherapy (neutropenia/leucopenia) (carboplatin)
Initial sample261 Japanese ancestry cases, 262 Japanese ancestry controls
Replication sampleNA
Region15q21.3
Chromosome idchr15
Chromosome position55657884
Reported genePRTG
Mapped genePRTG
Upstream gene id
Downstream gene id
SNP gene ids283659
Upstream gene distance
Downstream gene distance
SNP risk allelers11071200-T
SNPsrs11071200
Merged0
SNP id current11071200
Contextintron_variant
Intergenic0
Allele frequency0.008
P value0.0000009
Pvalue mlog6.04575749056067
P value text(Dominant model)
Or beta8.241
%95 Ci[2.888-23.520]
PlatformIllumina [733202]
CNVN
Mapped traitresponse to carboplatin, response to antineoplastic agent
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097328, http://purl.obolibrary.org/obo/GO_0097327
Study accessionGCST002004