Human SNP ID | rs11071200 |
---|---|
Human chromosome | chr15 |
Human SNP position | 55657884 |
Pig chromosome | chr1 |
Pig SNP position | 128713669 |
PubMed ID | 23648065 |
---|---|
Journal | Cancer Sci |
Link | www.ncbi.nlm.nih.gov/pubmed/23648065 |
Study | Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. |
Disease/Trait | Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin) |
Initial sample | 261 Japanese ancestry cases, 262 Japanese ancestry controls |
Replication sample | NA |
Region | 15q21.3 |
Chromosome id | chr15 |
Chromosome position | 55657884 |
Reported gene | PRTG |
Mapped gene | PRTG |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 283659 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11071200-T |
SNPs | rs11071200 |
Merged | 0 |
SNP id current | 11071200 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.008 |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | (Dominant model) |
Or beta | 8.241 |
%95 Ci | [2.888-23.520] |
Platform | Illumina [733202] |
CNV | N |
Mapped trait | response to carboplatin, response to antineoplastic agent |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097328, http://purl.obolibrary.org/obo/GO_0097327 |
Study accession | GCST002004 |