SNP Detail For rs11067228
1.Mapping Information
Human SNP ID rs11067228
Human chromosome chr12
Human SNP position 114656455
Pig chromosome chr14
Pig SNP position 40036506
2.Annotation Information
PubMed ID21160077
JournalSci Transl Med
Linkwww.ncbi.nlm.nih.gov/pubmed/21160077
StudyGenetic correction of PSA values using sequence variants associated with PSA levels.
Disease/TraitSerum prostate-specific antigen levels
Initial sample7,538 European ancestry individuals
Replication sample2,373 European ancestry individuals
Region12q24.21
Chromosome idchr12
Chromosome position114656455
Reported geneTBX3
Mapped geneLOC105369998 - TBX3
Upstream gene id105369998
Downstream gene id6926
SNP gene ids
Upstream gene distance207809
Downstream gene distance13799
SNP risk allelers11067228-A
SNPsrs11067228
Merged0
SNP id current11067228
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.56
P value0.00000000002
Pvalue mlog10.698970004336
P value text
Or beta8.3
%95 Ci[NR] % increase
PlatformIllumina [304070]
CNVN
Mapped traitprostate specific antigen measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004624
Study accessionGCST000919