Human SNP ID | rs11067228 |
---|---|
Human chromosome | chr12 |
Human SNP position | 114656455 |
Pig chromosome | chr14 |
Pig SNP position | 40036506 |
PubMed ID | 21160077 |
---|---|
Journal | Sci Transl Med |
Link | www.ncbi.nlm.nih.gov/pubmed/21160077 |
Study | Genetic correction of PSA values using sequence variants associated with PSA levels. |
Disease/Trait | Serum prostate-specific antigen levels |
Initial sample | 7,538 European ancestry individuals |
Replication sample | 2,373 European ancestry individuals |
Region | 12q24.21 |
Chromosome id | chr12 |
Chromosome position | 114656455 |
Reported gene | TBX3 |
Mapped gene | LOC105369998 - TBX3 |
Upstream gene id | 105369998 |
Downstream gene id | 6926 |
SNP gene ids | |
Upstream gene distance | 207809 |
Downstream gene distance | 13799 |
SNP risk allele | rs11067228-A |
SNPs | rs11067228 |
Merged | 0 |
SNP id current | 11067228 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.56 |
P value | 0.00000000002 |
Pvalue mlog | 10.698970004336 |
P value text | |
Or beta | 8.3 |
%95 Ci | [NR] % increase |
Platform | Illumina [304070] |
CNV | N |
Mapped trait | prostate specific antigen measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004624 |
Study accession | GCST000919 |