SNP Detail For rs11062102
1.Mapping Information
Human SNP ID rs11062102
Human chromosome chr12
Human SNP position 239619
Pig chromosome chr5
Pig SNP position 69881981
2.Annotation Information
PubMed ID26352407
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26352407
StudyGenome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.
Disease/TraitUrinary metabolites
Initial sample3,861 European ancestry individuals
Replication sample1,691European ancestry individuals
Region12p13.33
Chromosome idchr12
Chromosome position239619
Reported geneSLC6A13
Mapped geneSLC6A13
Upstream gene id
Downstream gene id
SNP gene ids6540
Upstream gene distance
Downstream gene distance
SNP risk allelers11062102-T
SNPsrs11062102
Merged
SNP id current11062102
Contextintron_variant
Intergenic0
Allele frequency0.36
P value0.00000000000000001
Pvalue mlog17
P value text(3-aminoisobutyrate)
Or beta0.1755
%95 Ci[NR] unit decrease
PlatformAffymetrix [620456]
CNVN
Mapped traiturinary metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005116
Study accessionGCST003119