SNP Detail For rs11055612
1.Mapping Information
Human SNP ID rs11055612
Human chromosome chr12
Human SNP position 13770394
Pig chromosome chr5
Pig SNP position 62055129
2.Annotation Information
PubMed ID20197096
JournalNeuroimage
Linkwww.ncbi.nlm.nih.gov/pubmed/20197096
StudyGenome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer__s disease.
Disease/TraitBrain structure (temporal lobe volume)
Initial sample173 European ancestry Alzheimer__s disease cases, 361 European ancestry Mild Cognitive Impairment cases, 208 European ancestry controls
Replication sampleNA
Region12p13.1
Chromosome idchr12
Chromosome position13770394
Reported geneGRIN2B
Mapped geneGRIN2B
Upstream gene id
Downstream gene id
SNP gene ids2904
Upstream gene distance
Downstream gene distance
SNP risk allelers11055612-C
SNPsrs11055612
Merged0
SNP id current11055612
Contextintron_variant
Intergenic0
Allele frequency0.5
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta3371.6
%95 Ci[NR] unit decrease
PlatformIllumina [546314]
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST000614