SNP Detail For rs1104918
1.Mapping Information
Human SNP ID rs1104918
Human chromosome chr15
Human SNP position 88180481
Pig chromosome chr1
Pig SNP position 212942025
2.Annotation Information
PubMed ID23453885
JournalLancet
Linkwww.ncbi.nlm.nih.gov/pubmed/23453885
StudyIdentification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.
Disease/TraitAutism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)
Initial sample6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder tr
Replication sampleNA
Region15q25.3
Chromosome idchr15
Chromosome position88180481
Reported geneNTRK3
Mapped geneNTRK3
Upstream gene id
Downstream gene id
SNP gene ids4916
Upstream gene distance
Downstream gene distance
SNP risk allelers1104918-T
SNPsrs1104918
Merged0
SNP id current1104918
Contextintron_variant
Intergenic0
Allele frequency
P value0.000006
Pvalue mlog5.22184874961635
P value text(Modelling analysis)
Or beta1.07
%95 Ci[1.04-1.10]
PlatformNR [1252901] (imputed)
CNVN
Mapped traitattention deficit hyperactivity disorder, unipolar depression, schizophrenia, autism spectrum disorder, bipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003888, http://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0000692, http://www.ebi.ac.uk/efo/EFO_0003756, http://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST001877