SNP Detail For rs110419
1.Mapping Information
Human SNP ID rs110419
Human chromosome chr11
Human SNP position 8231306
Pig chromosome chr9
Pig SNP position 1255403
2.Annotation Information
PubMed ID21124317
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/21124317
StudyIntegrative genomics identifies LMO1 as a neuroblastoma oncogene.
Disease/TraitNeuroblastoma
Initial sample1,627 European ancestry child cases, 3,254 European ancestry child controls
Replication sample624 European ancestry child cases, 2,843 European ancestry child controls
Region11p15.4
Chromosome idchr11
Chromosome position8231306
Reported geneLMO1
Mapped geneLMO1, LOC105376536
Upstream gene id
Downstream gene id
SNP gene ids4004, 105376536
Upstream gene distance
Downstream gene distance
SNP risk allelers110419-A
SNPsrs110419
Merged0
SNP id current110419
Contextintron_variant
Intergenic0
Allele frequency0.49
P value0.0000000000000005
Pvalue mlog15.3010299956639
P value text
Or beta1.34
%95 Ci[1.25-1.44]
PlatformIllumina [480279]
CNVN
Mapped traitneuroblastoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000621
Study accessionGCST000901
PubMed ID22941191
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22941191
StudyCommon variation at 6q16 within HACE1 and LIN28B influences susceptibility to neuroblastoma.
Disease/TraitNeuroblastoma
Initial sample2,101 European ancestry cases, 4,202 European ancestry controls
Replication sample351 European ancestry cases, 780 European ancestry controls, 365 African American cases, 2,491 African American controls
Region11p15.4
Chromosome idchr11
Chromosome position8231306
Reported geneLMO1
Mapped geneLMO1, LOC105376536
Upstream gene id
Downstream gene id
SNP gene ids4004, 105376536
Upstream gene distance
Downstream gene distance
SNP risk allelers110419-A
SNPsrs110419
Merged0
SNP id current110419
Contextintron_variant
Intergenic0
Allele frequency0.489
P value0.0000000000001
Pvalue mlog13
P value text
Or beta1.32
%95 Ci[NR]
PlatformIllumina [426697]
CNVN
Mapped traitneuroblastoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000621
Study accessionGCST001660