Human SNP ID | rs110419 |
---|---|
Human chromosome | chr11 |
Human SNP position | 8231306 |
Pig chromosome | chr9 |
Pig SNP position | 1255403 |
PubMed ID | 21124317 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/21124317 |
Study | Integrative genomics identifies LMO1 as a neuroblastoma oncogene. |
Disease/Trait | Neuroblastoma |
Initial sample | 1,627 European ancestry child cases, 3,254 European ancestry child controls |
Replication sample | 624 European ancestry child cases, 2,843 European ancestry child controls |
Region | 11p15.4 |
Chromosome id | chr11 |
Chromosome position | 8231306 |
Reported gene | LMO1 |
Mapped gene | LMO1, LOC105376536 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4004, 105376536 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs110419-A |
SNPs | rs110419 |
Merged | 0 |
SNP id current | 110419 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.49 |
P value | 0.0000000000000005 |
Pvalue mlog | 15.3010299956639 |
P value text | |
Or beta | 1.34 |
%95 Ci | [1.25-1.44] |
Platform | Illumina [480279] |
CNV | N |
Mapped trait | neuroblastoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000621 |
Study accession | GCST000901 |
PubMed ID | 22941191 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22941191 |
Study | Common variation at 6q16 within HACE1 and LIN28B influences susceptibility to neuroblastoma. |
Disease/Trait | Neuroblastoma |
Initial sample | 2,101 European ancestry cases, 4,202 European ancestry controls |
Replication sample | 351 European ancestry cases, 780 European ancestry controls, 365 African American cases, 2,491 African American controls |
Region | 11p15.4 |
Chromosome id | chr11 |
Chromosome position | 8231306 |
Reported gene | LMO1 |
Mapped gene | LMO1, LOC105376536 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4004, 105376536 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs110419-A |
SNPs | rs110419 |
Merged | 0 |
SNP id current | 110419 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.489 |
P value | 0.0000000000001 |
Pvalue mlog | 13 |
P value text | |
Or beta | 1.32 |
%95 Ci | [NR] |
Platform | Illumina [426697] |
CNV | N |
Mapped trait | neuroblastoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000621 |
Study accession | GCST001660 |