Human SNP ID | rs11038871 |
---|---|
Human chromosome | chr11 |
Human SNP position | 46357892 |
Pig chromosome | chr2 |
Pig SNP position | 17498204 |
PubMed ID | 20694011 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20694011 |
Study | Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency. |
Disease/Trait | Immunoglobulin A |
Initial sample | 430 European ancestry cases, 1,090 European ancestry controls |
Replication sample | 342 European ancestry cases, 886 European ancestry controls |
Region | 11p11.2 |
Chromosome id | chr11 |
Chromosome position | 46357892 |
Reported gene | DGKZ, MDK, AMBRA1, HARBI1, ATG13, F2, CKAP5 |
Mapped gene | DGKZ |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8525 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11038871-C |
SNPs | rs11038871 |
Merged | 0 |
SNP id current | 11038871 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.248 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.36 |
%95 Ci | [1.19-1.55] |
Platform | Illumina [2057134] (imputed) |
CNV | N |
Mapped trait | protein measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004747 |
Study accession | GCST000763 |