SNP Detail For rs11038871
1.Mapping Information
Human SNP ID rs11038871
Human chromosome chr11
Human SNP position 46357892
Pig chromosome chr2
Pig SNP position 17498204
2.Annotation Information
PubMed ID20694011
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20694011
StudyAssociation of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.
Disease/TraitImmunoglobulin A
Initial sample430 European ancestry cases, 1,090 European ancestry controls
Replication sample342 European ancestry cases, 886 European ancestry controls
Region11p11.2
Chromosome idchr11
Chromosome position46357892
Reported geneDGKZ, MDK, AMBRA1, HARBI1, ATG13, F2, CKAP5
Mapped geneDGKZ
Upstream gene id
Downstream gene id
SNP gene ids8525
Upstream gene distance
Downstream gene distance
SNP risk allelers11038871-C
SNPsrs11038871
Merged0
SNP id current11038871
Contextintron_variant
Intergenic0
Allele frequency0.248
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.36
%95 Ci[1.19-1.55]
PlatformIllumina [2057134] (imputed)
CNVN
Mapped traitprotein measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004747
Study accessionGCST000763