Human SNP ID | rs11024102 |
---|---|
Human chromosome | chr11 |
Human SNP position | 16987058 |
Pig chromosome | chr2 |
Pig SNP position | 45164191 |
PubMed ID | 22922875 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22922875 |
Study | Genome-wide association analyses identify three new susceptibility loci for primary angle closure glaucoma. |
Disease/Trait | Glaucoma (primary angle closure) |
Initial sample | 1,281 East Asian ancestry cases, 1,987 East Asian ancestry controls, 337 South Indian ancestry cases, 2,538 South Indian ancestry controls, 236 South East Asian ancestry cases, 5,083 South East Asian ancestry controls |
Replication sample | 1,545 East Asian ancestry cases, 3,756 East Asian ancestry controls, 165 Saudi Arabian ancestry cases, 175 Saudi Arabian ancestry controls, 127 European ancestry cases, 4,703 European ancestry controls, 80 Indian ancestry cases, 309 Indian ancestry contro |
Region | 11p15.1 |
Chromosome id | chr11 |
Chromosome position | 16987058 |
Reported gene | PLEKHA7 |
Mapped gene | PLEKHA7 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 144100 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11024102-G |
SNPs | rs11024102 |
Merged | 0 |
SNP id current | 11024102 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000000005 |
Pvalue mlog | 11.3010299956639 |
P value text | |
Or beta | 1.22 |
%95 Ci | [NR] |
Platform | Illumina [493501] |
CNV | N |
Mapped trait | glaucoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000516 |
Study accession | GCST001649 |