SNP Detail For rs11016883
1.Mapping Information
Human SNP ID rs11016883
Human chromosome chr10
Human SNP position 129702676
Pig chromosome chr14
Pig SNP position 150845651
2.Annotation Information
PubMed ID23192594
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23192594
StudyGene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women__s Health Initiative SHARe Study.
Disease/TraitWaist-to-hip circumference ratio (interaction)
Initial sample8,203 African American females, 3,484 Hispanic females
Replication sampleNA
Region10q26.3
Chromosome idchr10
Chromosome position129702676
Reported geneMGMT
Mapped geneMGMT
Upstream gene id
Downstream gene id
SNP gene ids4255
Upstream gene distance
Downstream gene distance
SNP risk allelers11016883-C
SNPsrs11016883
Merged0
SNP id current11016883
Contextintron_variant
Intergenic0
Allele frequency0.25
P value0.0000009
Pvalue mlog6.04575749056067
P value text(AA, Smoking, Ever/Never)
Or beta0.01
%95 Ci[0.01-0.02] unit increase
PlatformAffymetrix [706791]
CNVN
Mapped traitwaist-hip ratio
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004343
Study accessionGCST001754