Human SNP ID | rs11012 |
---|---|
Human chromosome | chr17 |
Human SNP position | 45436075 |
Pig chromosome | chr12 |
Pig SNP position | 18201896 |
PubMed ID | 20070850 |
---|---|
Journal | Ann Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20070850 |
Study | Genome-wide association study confirms SNPs in SNCA and the MAPT region as common risk factors for Parkinson disease. |
Disease/Trait | Parkinson__s disease |
Initial sample | 1,752 European ancestry cases, 1,745 European ancestry controls |
Replication sample | NA |
Region | 17q21.31 |
Chromosome id | chr17 |
Chromosome position | 45436075 |
Reported gene | MAPT, PLEKHM1, IMP5 |
Mapped gene | PLEKHM1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9842 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11012-T |
SNPs | rs11012 |
Merged | 0 |
SNP id current | 11012 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000006 |
Pvalue mlog | 7.22184874961635 |
P value text | |
Or beta | 1.43 |
%95 Ci | [1.27-1.61] |
Platform | Illumina [495715] (imputed) |
CNV | N |
Mapped trait | Parkinson__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002508 |
Study accession | GCST000567 |