SNP Detail For rs11012
1.Mapping Information
Human SNP ID rs11012
Human chromosome chr17
Human SNP position 45436075
Pig chromosome chr12
Pig SNP position 18201896
2.Annotation Information
PubMed ID20070850
JournalAnn Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20070850
StudyGenome-wide association study confirms SNPs in SNCA and the MAPT region as common risk factors for Parkinson disease.
Disease/TraitParkinson__s disease
Initial sample1,752 European ancestry cases, 1,745 European ancestry controls
Replication sampleNA
Region17q21.31
Chromosome idchr17
Chromosome position45436075
Reported geneMAPT, PLEKHM1, IMP5
Mapped genePLEKHM1
Upstream gene id
Downstream gene id
SNP gene ids9842
Upstream gene distance
Downstream gene distance
SNP risk allelers11012-T
SNPsrs11012
Merged0
SNP id current11012
Context3_prime_UTR_variant
Intergenic0
Allele frequencyNR
P value0.00000006
Pvalue mlog7.22184874961635
P value text
Or beta1.43
%95 Ci[1.27-1.61]
PlatformIllumina [495715] (imputed)
CNVN
Mapped traitParkinson__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002508
Study accessionGCST000567