SNP Detail For rs11006464
1.Mapping Information
Human SNP ID rs11006464
Human chromosome chr10
Human SNP position 59386824
Pig chromosome chr14
Pig SNP position 67665976
2.Annotation Information
PubMed ID23362303
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23362303
StudyGenome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortiu
Disease/TraitOleic acid (18:1n-9) plasma levels
Initial sample8,961 European ancestry individuals
Replication sample
Region10q21.1
Chromosome idchr10
Chromosome position59386824
Reported geneFAM13C1
Mapped geneFAM13C - LOC105378318
Upstream gene id220965
Downstream gene id105378318
SNP gene ids
Upstream gene distance23643
Downstream gene distance191874
SNP risk allelers11006464-T
SNPsrs11006464
Merged0
SNP id current11006464
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta0.3832
%95 Ciunit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitphospholipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004639
Study accessionGCST001834