SNP Detail For rs10998624
1.Mapping Information
Human SNP ID rs10998624
Human chromosome chr10
Human SNP position 69180045
Pig chromosome chr14
Pig SNP position 78262380
2.Annotation Information
PubMed ID22610502
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22610502
StudyGenome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.
Disease/TraitImmune reponse to smallpox (secreted IL-1beta)
Initial sampleUp to 512 European ancestry individuals, up to 199 African American individuals
Replication sampleNA
Region10q22.1
Chromosome idchr10
Chromosome position69180045
Reported geneSUPV3L1, VPS26A
Mapped geneVPS26A - SUPV3L1
Upstream gene id9559
Downstream gene id6832
SNP gene ids
Upstream gene distance7184
Downstream gene distance159
SNP risk allelers10998624-A
SNPsrs10998624
Merged0
SNP id current10998624
Contextupstream_gene_variant
Intergenic1
Allele frequency
P value0.000000001
Pvalue mlog9
P value text(EA)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitresponse to vaccine, cytokine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873
Study accessionGCST001533