Human SNP ID | rs10998624 |
---|---|
Human chromosome | chr10 |
Human SNP position | 69180045 |
Pig chromosome | chr14 |
Pig SNP position | 78262380 |
PubMed ID | 22610502 |
---|---|
Journal | Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22610502 |
Study | Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients. |
Disease/Trait | Immune reponse to smallpox (secreted IL-1beta) |
Initial sample | Up to 512 European ancestry individuals, up to 199 African American individuals |
Replication sample | NA |
Region | 10q22.1 |
Chromosome id | chr10 |
Chromosome position | 69180045 |
Reported gene | SUPV3L1, VPS26A |
Mapped gene | VPS26A - SUPV3L1 |
Upstream gene id | 9559 |
Downstream gene id | 6832 |
SNP gene ids | |
Upstream gene distance | 7184 |
Downstream gene distance | 159 |
SNP risk allele | rs10998624-A |
SNPs | rs10998624 |
Merged | 0 |
SNP id current | 10998624 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | (EA) |
Or beta | |
%95 Ci | |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | response to vaccine, cytokine measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873 |
Study accession | GCST001533 |