SNP Detail For rs10988428
1.Mapping Information
Human SNP ID rs10988428
Human chromosome chr9
Human SNP position 129576791
Pig chromosome chr1
Pig SNP position 303828559
2.Annotation Information
PubMed ID23934736
JournalGenet Epidemiol
Linkwww.ncbi.nlm.nih.gov/pubmed/23934736
StudyGenome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.
Disease/TraitMetabolite levels (Pyroglutamine)
Initial sample1,260 African American individuals
Replication sampleNA
Region9q34.11
Chromosome idchr9
Chromosome position129576791
Reported geneC9orf50
Mapped geneLOC105376292
Upstream gene id
Downstream gene id
SNP gene ids105376292
Upstream gene distance
Downstream gene distance
SNP risk allelers10988428-G
SNPsrs10988428
Merged0
SNP id current10988428
Contextintron_variant
Intergenic0
Allele frequency
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta0.12
%95 Ci[0.07-0.17] unit increase
PlatformAffymetrix [~ 2500000] (imputed)
CNVN
Mapped traitpyroglutamine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005408
Study accessionGCST002118