Human SNP ID | rs10980800 |
---|---|
Human chromosome | chr9 |
Human SNP position | 111153625 |
Pig chromosome | chr1 |
Pig SNP position | 282896345 |
PubMed ID | 21738480 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21738480 |
Study | Multiple loci are associated with white blood cell phenotypes. |
Disease/Trait | White blood cell count |
Initial sample | 19,509 European ancestry individuals |
Replication sample | 11,823 European ancestry individuals |
Region | 9q31.3 |
Chromosome id | chr9 |
Chromosome position | 111153625 |
Reported gene | OR2K2, EDG2 |
Mapped gene | LOC105376219 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105376219 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10980800-T |
SNPs | rs10980800 |
Merged | 0 |
SNP id current | 10980800 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 2E-22 |
Pvalue mlog | 21.698970004336 |
P value text | (Monocytes) |
Or beta | 0.042 |
%95 Ci | [0.034-0.050] unit decrease |
Platform | Affymetrix, Illumina [> 2400000] (imputed) |
CNV | N |
Mapped trait | monocyte count |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005091 |
Study accession | GCST001137 |
PubMed ID | 25096241 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25096241 |
Study | Trans-ethnic meta-analysis of white blood cell phenotypes. |
Disease/Trait | Monocyte count |
Initial sample | 9,810 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,369 African American individuals |
Replication sample | NA |
Region | 9q31.3 |
Chromosome id | chr9 |
Chromosome position | 111153625 |
Reported gene | intergenic |
Mapped gene | LOC105376219 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105376219 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10980800-C |
SNPs | rs10980800 |
Merged | 0 |
SNP id current | 10980800 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.769 |
P value | 0.00000000000001 |
Pvalue mlog | 14 |
P value text | (EA) |
Or beta | 0.044 |
%95 Ci | [0.032-0.056] unit increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | monocyte count |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005091 |
Study accession | GCST002555 |