SNP Detail For rs10980800
1.Mapping Information
Human SNP ID rs10980800
Human chromosome chr9
Human SNP position 111153625
Pig chromosome chr1
Pig SNP position 282896345
2.Annotation Information
PubMed ID21738480
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21738480
StudyMultiple loci are associated with white blood cell phenotypes.
Disease/TraitWhite blood cell count
Initial sample19,509 European ancestry individuals
Replication sample11,823 European ancestry individuals
Region9q31.3
Chromosome idchr9
Chromosome position111153625
Reported geneOR2K2, EDG2
Mapped geneLOC105376219
Upstream gene id
Downstream gene id
SNP gene ids105376219
Upstream gene distance
Downstream gene distance
SNP risk allelers10980800-T
SNPsrs10980800
Merged0
SNP id current10980800
Contextintron_variant
Intergenic0
Allele frequency
P value2E-22
Pvalue mlog21.698970004336
P value text(Monocytes)
Or beta0.042
%95 Ci[0.034-0.050] unit decrease
PlatformAffymetrix, Illumina [> 2400000] (imputed)
CNVN
Mapped traitmonocyte count
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005091
Study accessionGCST001137
PubMed ID25096241
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25096241
StudyTrans-ethnic meta-analysis of white blood cell phenotypes.
Disease/TraitMonocyte count
Initial sample9,810 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,369 African American individuals
Replication sampleNA
Region9q31.3
Chromosome idchr9
Chromosome position111153625
Reported geneintergenic
Mapped geneLOC105376219
Upstream gene id
Downstream gene id
SNP gene ids105376219
Upstream gene distance
Downstream gene distance
SNP risk allelers10980800-C
SNPsrs10980800
Merged0
SNP id current10980800
Contextintron_variant
Intergenic0
Allele frequency0.769
P value0.00000000000001
Pvalue mlog14
P value text(EA)
Or beta0.044
%95 Ci[0.032-0.056] unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitmonocyte count
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005091
Study accessionGCST002555