SNP Detail For rs10980508
1.Mapping Information
Human SNP ID rs10980508
Human chromosome chr9
Human SNP position 110657479
Pig chromosome chr1
Pig SNP position 282394252
2.Annotation Information
PubMed ID23386860
JournalFront Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23386860
StudyExploring genome-wide - dietary heme iron intake interactions and the risk of type 2 diabetes.
Disease/TraitType 2 diabetes (dietary heme iron intake interaction)
Initial sample1,806 European ancestry cases, 2,965 European ancestry controls
Replication sampleNA
Region9q31.3
Chromosome idchr9
Chromosome position110657479
Reported geneSVEP1, MUSK
Mapped geneLOC105376218 - MUSK
Upstream gene id105376218
Downstream gene id4593
SNP gene ids
Upstream gene distance36870
Downstream gene distance11066
SNP risk allelers10980508-?
SNPsrs10980508
Merged0
SNP id current10980508
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text
Or beta0.64
%95 Ci[NR] unit increase
PlatformAffymetrix [681770]
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST001843