SNP Detail For rs10979
1.Mapping Information
Human SNP ID rs10979
Human chromosome chr6
Human SNP position 143568902
Pig chromosome chr1
Pig SNP position 24080092
2.Annotation Information
PubMed ID25108383
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25108383
StudyGenome-wide association analyses identify variants in developmental genes associated with hypospadias.
Disease/TraitHypospadias
Initial sample1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls
Replication sample1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls
Region6q24.2
Chromosome idchr6
Chromosome position143568902
Reported geneRP11-436I24.1
Mapped geneLOC285740
Upstream gene id
Downstream gene id
SNP gene ids285740
Upstream gene distance
Downstream gene distance
SNP risk allelers10979-A
SNPsrs10979
Merged0
SNP id current10979
Contextintron_variant
Intergenic0
Allele frequency0.669
P value0.000001
Pvalue mlog6
P value text
Or beta1.1943
%95 Ci[NR]
PlatformIllumina [8207076] (imputed)
CNVN
Mapped traithypospadias
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004209
Study accessionGCST002563