SNP Detail For rs10971170
1.Mapping Information
Human SNP ID rs10971170
Human chromosome chr9
Human SNP position 32870070
Pig chromosome chr10
Pig SNP position 37787623
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region9p21.1
Chromosome idchr9
Chromosome position32870070
Reported geneNR
Mapped geneTMEM215 - ASS1P12
Upstream gene id401498
Downstream gene id392302
SNP gene ids
Upstream gene distance80869
Downstream gene distance75824
SNP risk allelers10971170-G
SNPsrs10971170
Merged0
SNP id current10971170
Contextupstream_gene_variant
Intergenic1
Allele frequency0.969529949122017
P value0.000009
Pvalue mlog5.04575749056067
P value text(IGP16)
Or beta0.4143
%95 Ci[0.23-0.6] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848