Human SNP ID | rs10971170 |
---|---|
Human chromosome | chr9 |
Human SNP position | 32870070 |
Pig chromosome | chr10 |
Pig SNP position | 37787623 |
PubMed ID | 23382691 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 9p21.1 |
Chromosome id | chr9 |
Chromosome position | 32870070 |
Reported gene | NR |
Mapped gene | TMEM215 - ASS1P12 |
Upstream gene id | 401498 |
Downstream gene id | 392302 |
SNP gene ids | |
Upstream gene distance | 80869 |
Downstream gene distance | 75824 |
SNP risk allele | rs10971170-G |
SNPs | rs10971170 |
Merged | 0 |
SNP id current | 10971170 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.969529949122017 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (IGP16) |
Or beta | 0.4143 |
%95 Ci | [0.23-0.6] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |