SNP Detail For rs10968749
1.Mapping Information
Human SNP ID rs10968749
Human chromosome chr9
Human SNP position 28752486
Pig chromosome chr10
Pig SNP position 42297145
2.Annotation Information
PubMed ID25944848
JournalJ Psychopharmacol
Linkwww.ncbi.nlm.nih.gov/pubmed/25944848
StudyGenome-wide association study identifies common variants associated with pharmacokinetics of psychotropic drugs.
Disease/TraitPharmacokinetics of olanzapine in severe mental disorder (concentration dose ratio)
Initial sampleUp to 290 European ancestry cases
Replication sampleNA
Region9p21.1
Chromosome idchr9
Chromosome position28752486
Reported geneLINGO2
Mapped geneLINGO2
Upstream gene id
Downstream gene id
SNP gene ids158038
Upstream gene distance
Downstream gene distance
SNP risk allelers10968749-G
SNPsrs10968749
Merged
SNP id current10968749
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta0.8345
%95 Ci[NR] unit decrease
PlatformAffymetrix [686595]
CNVN
Mapped traitunipolar depression, schizophrenia, bipolar disorder, response to olanzapine, concentration dose ratio
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0000692, http://www.ebi.ac.uk/efo/EFO_0000289, http://purl.obolibrary.org/obo/GO_0097333, http://www.ebi.ac.uk/efo/EFO_0007635
Study accessionGCST002885