Human SNP ID | rs10968576 |
---|---|
Human chromosome | chr9 |
Human SNP position | 28414341 |
Pig chromosome | chr10 |
Pig SNP position | 42575256 |
PubMed ID | 20935630 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20935630 |
Study | Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index. |
Disease/Trait | Body mass index |
Initial sample | Up to 123,865 European ancestry individuals |
Replication sample | Up to 125,931 European ancestry individuals |
Region | 9p21.1 |
Chromosome id | chr9 |
Chromosome position | 28414341 |
Reported gene | LRRN6C |
Mapped gene | LINGO2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 158038 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10968576-G |
SNPs | rs10968576 |
Merged | 0 |
SNP id current | 10968576 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.31 |
P value | 0.0000000000003 |
Pvalue mlog | 12.5228787452803 |
P value text | |
Or beta | 0.11 |
%95 Ci | [0.07-0.15] kg/m2 increase |
Platform | Affymetrix, Illumina, Perlegen [~ 2800000] (imputed) |
CNV | N |
Mapped trait | body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST000830 |
PubMed ID | 23563607 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23563607 |
Study | Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. |
Disease/Trait | Obesity |
Initial sample | 93,015 European ancestry overweight individuals, 32,858 European ancestry class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls |
Replication sample | 65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls |
Region | 9p21.1 |
Chromosome id | chr9 |
Chromosome position | 28414341 |
Reported gene | LINGO2 |
Mapped gene | LINGO2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 158038 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10968576-G |
SNPs | rs10968576 |
Merged | 0 |
SNP id current | 10968576 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.32 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | (Obesity class I) |
Or beta | 1.07 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [~ 2800000] (imputed) |
CNV | N |
Mapped trait | obesity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001073 |
Study accession | GCST001953 |
PubMed ID | 25673413 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
Study | Genetic studies of body mass index yield new insights for obesity biology. |
Disease/Trait | Body mass index |
Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
Region | 9p21.1 |
Chromosome id | chr9 |
Chromosome position | 28414341 |
Reported gene | LINGO2 |
Mapped gene | LINGO2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 158038 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10968576-G |
SNPs | rs10968576 |
Merged | 0 |
SNP id current | 10968576 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.32 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | (EA, men) |
Or beta | 0.02 |
%95 Ci | [0.011-0.028] kg/m2 increase |
Platform | Affymetrix, Illumina [2550021] |
CNV | N |
Mapped trait | body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002783 |
PubMed ID | 25673413 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
Study | Genetic studies of body mass index yield new insights for obesity biology. |
Disease/Trait | Body mass index |
Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
Region | 9p21.1 |
Chromosome id | chr9 |
Chromosome position | 28414341 |
Reported gene | LINGO2 |
Mapped gene | LINGO2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 158038 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10968576-G |
SNPs | rs10968576 |
Merged | 0 |
SNP id current | 10968576 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.319 |
P value | 0.00000000001 |
Pvalue mlog | 11 |
P value text | (EA, women) |
Or beta | 0.029 |
%95 Ci | [0.02-0.037] kg/m2 increase |
Platform | Affymetrix, Illumina [2550021] |
CNV | N |
Mapped trait | body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002783 |
PubMed ID | 25673413 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
Study | Genetic studies of body mass index yield new insights for obesity biology. |
Disease/Trait | Body mass index |
Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
Region | 9p21.1 |
Chromosome id | chr9 |
Chromosome position | 28414341 |
Reported gene | LINGO2 |
Mapped gene | LINGO2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 158038 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10968576-G |
SNPs | rs10968576 |
Merged | 0 |
SNP id current | 10968576 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.32 |
P value | 0.00000000000007 |
Pvalue mlog | 13.1549019599857 |
P value text | (EA) |
Or beta | 0.025 |
%95 Ci | [0.018-0.031] kg/m2 increase |
Platform | Affymetrix, Illumina [2550021] |
CNV | N |
Mapped trait | body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002783 |
PubMed ID | 25673413 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
Study | Genetic studies of body mass index yield new insights for obesity biology. |
Disease/Trait | Body mass index |
Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
Region | 9p21.1 |
Chromosome id | chr9 |
Chromosome position | 28414341 |
Reported gene | LINGO2 |
Mapped gene | LINGO2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 158038 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10968576-G |
SNPs | rs10968576 |
Merged | 0 |
SNP id current | 10968576 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.315 |
P value | 0.00000000000002 |
Pvalue mlog | 13.698970004336 |
P value text | |
Or beta | 0.025 |
%95 Ci | [0.018-0.031] kg/m2 increase |
Platform | Affymetrix, Illumina [2550021] |
CNV | N |
Mapped trait | body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002783 |