SNP Detail For rs10968562
1.Mapping Information
Human SNP ID rs10968562
Human chromosome chr9
Human SNP position 28402045
Pig chromosome chr10
Pig SNP position 42586651
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region9p21.1
Chromosome idchr9
Chromosome position28402045
Reported geneLINGO2
Mapped geneLINGO2
Upstream gene id
Downstream gene id
SNP gene ids158038
Upstream gene distance
Downstream gene distance
SNP risk allelers10968562-G
SNPsrs10968562
Merged0
SNP id current10968562
Contextintron_variant
Intergenic0
Allele frequency0.302
P value0.000007
Pvalue mlog5.15490195998574
P value text(BMI z-score change )
Or beta0.03
%95 Ci[NR] SD/y increase
PlatformIllumina [899892]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST001762