SNP Detail For rs10961577
1.Mapping Information
Human SNP ID rs10961577
Human chromosome chr9
Human SNP position 14562316
Pig chromosome chr1
Pig SNP position 231795746
2.Annotation Information
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitVisceral adipose tissue adjusted for BMI
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region9p22.3
Chromosome idchr9
Chromosome position14562316
Reported geneZDHHC21
Mapped geneZDHHC21
Upstream gene id
Downstream gene id
SNP gene ids340481
Upstream gene distance
Downstream gene distance
SNP risk allelers10961577-C
SNPsrs10961577
Merged0
SNP id current10961577
Contextregulatory_region_variant
Intergenic0
Allele frequency0.96
P value0.000007
Pvalue mlog5.15490195998574
P value text(men)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitvisceral adipose tissue measurement, body mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004765, http://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST001523