SNP Detail For rs10957961
1.Mapping Information
Human SNP ID rs10957961
Human chromosome chr8
Human SNP position 80119587
Pig chromosome chr4
Pig SNP position 61751314
2.Annotation Information
PubMed ID23934736
JournalGenet Epidemiol
Linkwww.ncbi.nlm.nih.gov/pubmed/23934736
StudyGenome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.
Disease/TraitMetabolite levels (Pyroglutamine)
Initial sample1,260 African American individuals
Replication sampleNA
Region8q21.13
Chromosome idchr8
Chromosome position80119587
Reported geneTPD52
Mapped geneTPD52
Upstream gene id
Downstream gene id
SNP gene ids7163
Upstream gene distance
Downstream gene distance
SNP risk allelers10957961-A
SNPsrs10957961
Merged0
SNP id current10957961
Contextintron_variant
Intergenic0
Allele frequency
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta0.153
%95 Ci[0.10-0.23] unit increase
PlatformAffymetrix [~ 2500000] (imputed)
CNVN
Mapped traitpyroglutamine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005408
Study accessionGCST002118