SNP Detail For rs10953541
1.Mapping Information
Human SNP ID rs10953541
Human chromosome chr7
Human SNP position 107604100
Pig chromosome chr9
Pig SNP position 118072053
2.Annotation Information
PubMed ID21378988
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21378988
StudyA genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.
Disease/TraitCoronary heart disease
Initial sample8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls
Replication sample18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls
Region7q22.3
Chromosome idchr7
Chromosome position107604100
Reported geneintergenic
Mapped geneBCAP29
Upstream gene id
Downstream gene id
SNP gene ids55973
Upstream gene distance
Downstream gene distance
SNP risk allelers10953541-C
SNPsrs10953541
Merged0
SNP id current10953541
Contextintron_variant
Intergenic0
Allele frequency0.8
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta1.08
%95 Ci[1.05-1.11]
PlatformIllumina [574919]
CNVN
Mapped traitcoronary heart disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001645
Study accessionGCST000999