Human SNP ID | rs10953541 |
---|---|
Human chromosome | chr7 |
Human SNP position | 107604100 |
Pig chromosome | chr9 |
Pig SNP position | 118072053 |
PubMed ID | 21378988 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21378988 |
Study | A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease. |
Disease/Trait | Coronary heart disease |
Initial sample | 8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls |
Replication sample | 18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls |
Region | 7q22.3 |
Chromosome id | chr7 |
Chromosome position | 107604100 |
Reported gene | intergenic |
Mapped gene | BCAP29 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 55973 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10953541-C |
SNPs | rs10953541 |
Merged | 0 |
SNP id current | 10953541 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.8 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | |
Or beta | 1.08 |
%95 Ci | [1.05-1.11] |
Platform | Illumina [574919] |
CNV | N |
Mapped trait | coronary heart disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001645 |
Study accession | GCST000999 |