SNP Detail For rs10947261
1.Mapping Information
Human SNP ID rs10947261
Human chromosome chr6
Human SNP position 32405455
Pig chromosome chr7
Pig SNP position 29016598
2.Annotation Information
PubMed ID23850713
JournalGut
Linkwww.ncbi.nlm.nih.gov/pubmed/23850713
StudyGenome-wide association study of Crohn__s disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.
Disease/TraitCrohn__s disease
Initial sample532 Korean ancestry cases, 733 Korean ancestry controls
Replication sample1,779 Korean ancestry cases, 1,709 Korean ancestry controls
Region6p21.32
Chromosome idchr6
Chromosome position32405455
Reported geneHLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1
Mapped geneBTNL2, LOC101929163
Upstream gene id
Downstream gene id
SNP gene ids56244, 101929163
Upstream gene distance
Downstream gene distance
SNP risk allelers10947261-T
SNPsrs10947261
Merged0
SNP id current10947261
Contextintron_variant
Intergenic0
Allele frequency0.294
P value0.000000000003
Pvalue mlog11.5228787452803
P value text
Or beta1.36
%95 Ci[1.25-1.49]
PlatformIllumina [5664371] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST002094