Human SNP ID | rs10947261 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32405455 |
Pig chromosome | chr7 |
Pig SNP position | 29016598 |
PubMed ID | 23850713 |
---|---|
Journal | Gut |
Link | www.ncbi.nlm.nih.gov/pubmed/23850713 |
Study | Genome-wide association study of Crohn__s disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations. |
Disease/Trait | Crohn__s disease |
Initial sample | 532 Korean ancestry cases, 733 Korean ancestry controls |
Replication sample | 1,779 Korean ancestry cases, 1,709 Korean ancestry controls |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32405455 |
Reported gene | HLA-DRA, HLA-DRB5, BTNL2, HLA-DRB1, HLA-DQA1 |
Mapped gene | BTNL2, LOC101929163 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 56244, 101929163 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10947261-T |
SNPs | rs10947261 |
Merged | 0 |
SNP id current | 10947261 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.294 |
P value | 0.000000000003 |
Pvalue mlog | 11.5228787452803 |
P value text | |
Or beta | 1.36 |
%95 Ci | [1.25-1.49] |
Platform | Illumina [5664371] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST002094 |