SNP Detail For rs10946398
1.Mapping Information
Human SNP ID rs10946398
Human chromosome chr6
Human SNP position 20660803
Pig chromosome chr7
Pig SNP position 16933562
2.Annotation Information
PubMed ID19056611
JournalDiabetes
Linkwww.ncbi.nlm.nih.gov/pubmed/19056611
StudyAdiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data.
Disease/TraitType 2 diabetes
Initial sample958 European ancestry obese cases, 955 European ancestry non-obese cases, 2,938 European ancestry controls
Replication sampleUp to 3,757 European ancestry cases, up to 5,346 European ancestry controls
Region6p22.3
Chromosome idchr6
Chromosome position20660803
Reported geneCDKAL
Mapped geneCDKAL1
Upstream gene id
Downstream gene id
SNP gene ids54901
Upstream gene distance
Downstream gene distance
SNP risk allelers10946398-?
SNPsrs10946398
Merged0
SNP id current10946398
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000007
Pvalue mlog6.15490195998574
P value text(non-obese)
Or beta1.18
%95 Ci[1.11-1.26]
PlatformAffymetrix [393453]
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST000277
PubMed ID17463249
JournalScience
Linkwww.ncbi.nlm.nih.gov/pubmed/17463249
StudyReplication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.
Disease/TraitType 2 diabetes
Initial sample1,924 European ancestry cases, 2,938 European ancestry controls
Replication sample3,757 European ancestry cases, 5,346 European ancestry controls
Region6p22.3
Chromosome idchr6
Chromosome position20660803
Reported geneCDKAL1
Mapped geneCDKAL1
Upstream gene id
Downstream gene id
SNP gene ids54901
Upstream gene distance
Downstream gene distance
SNP risk allelers10946398-C
SNPsrs10946398
Merged0
SNP id current10946398
Contextintron_variant
Intergenic0
Allele frequency0.32
P value0.00000001
Pvalue mlog8
P value text
Or beta1.16
%95 Ci[1.10-1.22]
PlatformAffymetrix [393453]
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST000025