Human SNP ID | rs10946398 |
---|---|
Human chromosome | chr6 |
Human SNP position | 20660803 |
Pig chromosome | chr7 |
Pig SNP position | 16933562 |
PubMed ID | 19056611 |
---|---|
Journal | Diabetes |
Link | www.ncbi.nlm.nih.gov/pubmed/19056611 |
Study | Adiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data. |
Disease/Trait | Type 2 diabetes |
Initial sample | 958 European ancestry obese cases, 955 European ancestry non-obese cases, 2,938 European ancestry controls |
Replication sample | Up to 3,757 European ancestry cases, up to 5,346 European ancestry controls |
Region | 6p22.3 |
Chromosome id | chr6 |
Chromosome position | 20660803 |
Reported gene | CDKAL |
Mapped gene | CDKAL1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54901 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10946398-? |
SNPs | rs10946398 |
Merged | 0 |
SNP id current | 10946398 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | (non-obese) |
Or beta | 1.18 |
%95 Ci | [1.11-1.26] |
Platform | Affymetrix [393453] |
CNV | N |
Mapped trait | type II diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001360 |
Study accession | GCST000277 |
PubMed ID | 17463249 |
Journal | Science |
Link | www.ncbi.nlm.nih.gov/pubmed/17463249 |
Study | Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes. |
Disease/Trait | Type 2 diabetes |
Initial sample | 1,924 European ancestry cases, 2,938 European ancestry controls |
Replication sample | 3,757 European ancestry cases, 5,346 European ancestry controls |
Region | 6p22.3 |
Chromosome id | chr6 |
Chromosome position | 20660803 |
Reported gene | CDKAL1 |
Mapped gene | CDKAL1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54901 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10946398-C |
SNPs | rs10946398 |
Merged | 0 |
SNP id current | 10946398 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.32 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | |
Or beta | 1.16 |
%95 Ci | [1.10-1.22] |
Platform | Affymetrix [393453] |
CNV | N |
Mapped trait | type II diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001360 |
Study accession | GCST000025 |