SNP Detail For rs10944
1.Mapping Information
Human SNP ID rs10944
Human chromosome chr5
Human SNP position 79090022
Pig chromosome chr2
Pig SNP position 89459657
2.Annotation Information
PubMed ID25343990
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25343990
StudyGenome-wide association study of selenium concentrations.
Disease/TraitBlood and toenail selenium levels
Initial sample9,639 European ancestry individuals
Replication sampleNA
Region5q14.1
Chromosome idchr5
Chromosome position79090022
Reported geneBHMT2, BHMT
Mapped geneBHMT2
Upstream gene id
Downstream gene id
SNP gene ids23743
Upstream gene distance
Downstream gene distance
SNP risk allelers10944-T
SNPsrs10944
Merged0
SNP id current10944
Contextintron_variant
Intergenic0
Allele frequency0.49
P value1E-36
Pvalue mlog36
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2379663] (imputed)
CNVN
Mapped traitselenium measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006331
Study accessionGCST002670