SNP Detail For rs10940579
1.Mapping Information
Human SNP ID rs10940579
Human chromosome chr5
Human SNP position 57834991
Pig chromosome chr16
Pig SNP position 39405464
2.Annotation Information
PubMed ID22219177
JournalCarcinogenesis
Linkwww.ncbi.nlm.nih.gov/pubmed/22219177
StudyA genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.
Disease/TraitProstate cancer (gene x gene interaction)
Initial sample4,723 European ancestry cases, 4,792 European ancestry controls
Replication sampleNA
Region5q11.2 x 10q26.13
Chromosome idchr5 x 10
Chromosome position57834991 x 125008303
Reported geneACTBL2 x CTBP2
Mapped geneLOC105378982 - LOC101928539 x CTBP2
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers10940579-? x rs4962416-?
SNPsrs10940579 x rs4962416
Merged0
SNP id current
Contextregulatory_region_variant x intron_variant
Intergenic
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.32
%95 Ci[1.18-1.49]
PlatformAffymetrix, Illumina [1117531] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001370