Human SNP ID | rs10940579 |
---|---|
Human chromosome | chr5 |
Human SNP position | 57834991 |
Pig chromosome | chr16 |
Pig SNP position | 39405464 |
PubMed ID | 22219177 |
---|---|
Journal | Carcinogenesis |
Link | www.ncbi.nlm.nih.gov/pubmed/22219177 |
Study | A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. |
Disease/Trait | Prostate cancer (gene x gene interaction) |
Initial sample | 4,723 European ancestry cases, 4,792 European ancestry controls |
Replication sample | NA |
Region | 5q11.2 x 10q26.13 |
Chromosome id | chr5 x 10 |
Chromosome position | 57834991 x 125008303 |
Reported gene | ACTBL2 x CTBP2 |
Mapped gene | LOC105378982 - LOC101928539 x CTBP2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10940579-? x rs4962416-? |
SNPs | rs10940579 x rs4962416 |
Merged | 0 |
SNP id current | |
Context | regulatory_region_variant x intron_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 1.32 |
%95 Ci | [1.18-1.49] |
Platform | Affymetrix, Illumina [1117531] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001370 |