SNP Detail For rs10940138
1.Mapping Information
Human SNP ID rs10940138
Human chromosome chr5
Human SNP position 67898641
Pig chromosome chr16
Pig SNP position 49857185
2.Annotation Information
PubMed ID23599027
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23599027
StudyGenome-wide association study of age at menarche in African-American women.
Disease/TraitMenarche (age at onset)
Initial sample18,089 African American individuals
Replication sample2,850 African American individuals, 87,802 European ancestry inidividuals
Region5q13.1
Chromosome idchr5
Chromosome position67898641
Reported genePIK3R1
Mapped geneLOC101928858 - LOC105379007
Upstream gene id101928858
Downstream gene id105379007
SNP gene ids
Upstream gene distance97583
Downstream gene distance12230
SNP risk allelers10940138-T
SNPsrs10940138
Merged0
SNP id current10940138
Contextintron_variant
Intergenic1
Allele frequency0.19
P value0.0000004
Pvalue mlog6.39794000867203
P value text(AA)
Or beta5.64
%95 Ci[3.46-7.82] unit increase
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST001973