Human SNP ID | rs10940138 |
---|---|
Human chromosome | chr5 |
Human SNP position | 67898641 |
Pig chromosome | chr16 |
Pig SNP position | 49857185 |
PubMed ID | 23599027 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23599027 |
Study | Genome-wide association study of age at menarche in African-American women. |
Disease/Trait | Menarche (age at onset) |
Initial sample | 18,089 African American individuals |
Replication sample | 2,850 African American individuals, 87,802 European ancestry inidividuals |
Region | 5q13.1 |
Chromosome id | chr5 |
Chromosome position | 67898641 |
Reported gene | PIK3R1 |
Mapped gene | LOC101928858 - LOC105379007 |
Upstream gene id | 101928858 |
Downstream gene id | 105379007 |
SNP gene ids | |
Upstream gene distance | 97583 |
Downstream gene distance | 12230 |
SNP risk allele | rs10940138-T |
SNPs | rs10940138 |
Merged | 0 |
SNP id current | 10940138 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.19 |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | (AA) |
Or beta | 5.64 |
%95 Ci | [3.46-7.82] unit increase |
Platform | Affymetrix, Illumina [NR] (imputed) |
CNV | N |
Mapped trait | age at menarche |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004703 |
Study accession | GCST001973 |