SNP Detail For rs10938494
1.Mapping Information
Human SNP ID rs10938494
Human chromosome chr4
Human SNP position 47561431
Pig chromosome chr8
Pig SNP position 39415850
2.Annotation Information
PubMed ID19798445
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19798445
StudyGenetic determinants of circulating sphingolipid concentrations in European populations.
Disease/TraitSphingolipid levels
Initial sample4,110 European ancestry individuals
Replication sampleNA
Region4p12
Chromosome idchr4
Chromosome position47561431
Reported geneATP10D
Mapped geneATP10D
Upstream gene id
Downstream gene id
SNP gene ids57205
Upstream gene distance
Downstream gene distance
SNP risk allelers10938494-A
SNPsrs10938494
Merged0
SNP id current10938494
Contextintron_variant
Intergenic0
Allele frequency0.23
P value8E-19
Pvalue mlog18.096910013008
P value text(GluCer)
Or beta0.06
%95 Ci[0.04-0.07] unit increase
PlatformIllumina [318237]
CNVN
Mapped traitsphingolipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004622
Study accessionGCST000493