Human SNP ID | rs10937405 |
---|---|
Human chromosome | chr3 |
Human SNP position | 189665394 |
Pig chromosome | chr13 |
Pig SNP position | 136342293 |
PubMed ID | 20871597 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20871597 |
Study | Variation in TP63 is associated with lung adenocarcinoma susceptibility in Japanese and Korean populations. |
Disease/Trait | Lung adenocarcinoma |
Initial sample | 1,004 Japanese ancestry cases, 1,900 Japanese ancestry controls |
Replication sample | 1,094 East Asian ancestry cases, 9,148 East Asian ancestry controls |
Region | 3q28 |
Chromosome id | chr3 |
Chromosome position | 189665394 |
Reported gene | TP63 |
Mapped gene | TP63 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8626 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10937405-C |
SNPs | rs10937405 |
Merged | 0 |
SNP id current | 10937405 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.67 |
P value | 0.000000000007 |
Pvalue mlog | 11.1549019599857 |
P value text | |
Or beta | 1.31 |
%95 Ci | [1.22-1.42] |
Platform | Illumina [432024] |
CNV | N |
Mapped trait | lung adenocarcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000571 |
Study accession | GCST000810 |
PubMed ID | 22797724 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22797724 |
Study | A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population. |
Disease/Trait | Lung adenocarcinoma |
Initial sample | 1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls |
Replication sample | 4,334 Japanese ancestry cases, 8,202 Japanese ancestry controls |
Region | 3q28 |
Chromosome id | chr3 |
Chromosome position | 189665394 |
Reported gene | TP63 |
Mapped gene | TP63 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8626 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10937405-C |
SNPs | rs10937405 |
Merged | 0 |
SNP id current | 10937405 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.67 |
P value | 0.00000000000000007 |
Pvalue mlog | 16.1549019599857 |
P value text | |
Or beta | 1.25 |
%95 Ci | [1.19-1.32] |
Platform | Illumina [538166] |
CNV | N |
Mapped trait | lung adenocarcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000571 |
Study accession | GCST001609 |