SNP Detail For rs10937405
1.Mapping Information
Human SNP ID rs10937405
Human chromosome chr3
Human SNP position 189665394
Pig chromosome chr13
Pig SNP position 136342293
2.Annotation Information
PubMed ID20871597
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20871597
StudyVariation in TP63 is associated with lung adenocarcinoma susceptibility in Japanese and Korean populations.
Disease/TraitLung adenocarcinoma
Initial sample1,004 Japanese ancestry cases, 1,900 Japanese ancestry controls
Replication sample1,094 East Asian ancestry cases, 9,148 East Asian ancestry controls
Region3q28
Chromosome idchr3
Chromosome position189665394
Reported geneTP63
Mapped geneTP63
Upstream gene id
Downstream gene id
SNP gene ids8626
Upstream gene distance
Downstream gene distance
SNP risk allelers10937405-C
SNPsrs10937405
Merged0
SNP id current10937405
Contextintron_variant
Intergenic0
Allele frequency0.67
P value0.000000000007
Pvalue mlog11.1549019599857
P value text
Or beta1.31
%95 Ci[1.22-1.42]
PlatformIllumina [432024]
CNVN
Mapped traitlung adenocarcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000571
Study accessionGCST000810
PubMed ID22797724
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22797724
StudyA genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population.
Disease/TraitLung adenocarcinoma
Initial sample1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls
Replication sample4,334 Japanese ancestry cases, 8,202 Japanese ancestry controls
Region3q28
Chromosome idchr3
Chromosome position189665394
Reported geneTP63
Mapped geneTP63
Upstream gene id
Downstream gene id
SNP gene ids8626
Upstream gene distance
Downstream gene distance
SNP risk allelers10937405-C
SNPsrs10937405
Merged0
SNP id current10937405
Contextintron_variant
Intergenic0
Allele frequency0.67
P value0.00000000000000007
Pvalue mlog16.1549019599857
P value text
Or beta1.25
%95 Ci[1.19-1.32]
PlatformIllumina [538166]
CNVN
Mapped traitlung adenocarcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000571
Study accessionGCST001609