Human SNP ID | rs10934853 |
---|---|
Human chromosome | chr3 |
Human SNP position | 128319530 |
Pig chromosome | JH118478-1 |
Pig SNP position | 163631 |
PubMed ID | 19767754 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19767754 |
Study | Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility. |
Disease/Trait | Prostate cancer |
Initial sample | Up to 1,968 European ancestry cases, 35,382 European ancestry controls |
Replication sample | Up to 11,806 European ancestry cases, 12,387 European ancestry controls |
Region | 3q21.3 |
Chromosome id | chr3 |
Chromosome position | 128319530 |
Reported gene | intergenic |
Mapped gene | EEFSEC |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 60678 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10934853-A |
SNPs | rs10934853 |
Merged | 0 |
SNP id current | 10934853 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.28 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | |
Or beta | 1.12 |
%95 Ci | [1.08-1.16] |
Platform | Illumina [310520] |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST000489 |
PubMed ID | 22219177 |
Journal | Carcinogenesis |
Link | www.ncbi.nlm.nih.gov/pubmed/22219177 |
Study | A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. |
Disease/Trait | Prostate cancer (gene x gene interaction) |
Initial sample | 4,723 European ancestry cases, 4,792 European ancestry controls |
Replication sample | NA |
Region | 14q32.31 x 3q21.3 |
Chromosome id | chr14 x 3 |
Chromosome position | 101260770 x 128319530 |
Reported gene | MIR656 x EEFSEC |
Mapped gene | LOC101929422 - LOC105370671 x EEFSEC |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2400997-? x rs10934853-? |
SNPs | rs2400997 x rs10934853 |
Merged | 0 |
SNP id current | |
Context | intron_variant x intron_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 1.25 |
%95 Ci | [1.14-1.38] |
Platform | Affymetrix, Illumina [1117531] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001370 |
PubMed ID | 22219177 |
Journal | Carcinogenesis |
Link | www.ncbi.nlm.nih.gov/pubmed/22219177 |
Study | A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. |
Disease/Trait | Prostate cancer (gene x gene interaction) |
Initial sample | 4,723 European ancestry cases, 4,792 European ancestry controls |
Replication sample | NA |
Region | 18q12.3 x 3q21.3 |
Chromosome id | chr18 x 3 |
Chromosome position | 45145697 x 128319530 |
Reported gene | MIR4319 x EEFSEC |
Mapped gene | LOC105372091 x EEFSEC |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs998124-? x rs10934853-? |
SNPs | rs998124 x rs10934853 |
Merged | 0 |
SNP id current | |
Context | intron_variant x intron_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 1.33 |
%95 Ci | [1.18-1.51] |
Platform | Affymetrix, Illumina [1117531] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001370 |
PubMed ID | 22219177 |
Journal | Carcinogenesis |
Link | www.ncbi.nlm.nih.gov/pubmed/22219177 |
Study | A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. |
Disease/Trait | Prostate cancer (gene x gene interaction) |
Initial sample | 4,723 European ancestry cases, 4,792 European ancestry controls |
Replication sample | NA |
Region | 9q33.1 x 3q21.3 |
Chromosome id | chr9 x 3 |
Chromosome position | 115068533 x 128319530 |
Reported gene | TNC x EEFSEC |
Mapped gene | TNC x EEFSEC |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7847271-? x rs10934853-? |
SNPs | rs7847271 x rs10934853 |
Merged | 0 |
SNP id current | |
Context | intron_variant x intron_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 1.4925 |
%95 Ci | [1.27-1.79] |
Platform | Affymetrix, Illumina [1117531] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001370 |