SNP Detail For rs10922438
1.Mapping Information
Human SNP ID rs10922438
Human chromosome chr1
Human SNP position 198500032
Pig chromosome chr10
Pig SNP position 26035752
2.Annotation Information
PubMed ID23648065
JournalCancer Sci
Linkwww.ncbi.nlm.nih.gov/pubmed/23648065
StudyGenome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.
Disease/TraitAdverse response to chemotherapy (neutropenia/leucopenia) (cyclophosphamide)
Initial sample168 Japanese ancestry cases, 335 Japanese ancestry controls
Replication sampleNA
Region1q31.3
Chromosome idchr1
Chromosome position198500032
Reported geneATP6V1G3
Mapped geneLOC105371677
Upstream gene id
Downstream gene id
SNP gene ids105371677
Upstream gene distance
Downstream gene distance
SNP risk allelers10922438-T
SNPsrs10922438
Merged0
SNP id current10922438
Contextintergenic_variant
Intergenic0
Allele frequency0.106
P value0.000006
Pvalue mlog5.22184874961635
P value text(Allelic model)
Or beta2.301
%95 Ci[1.608-3.293]
PlatformIllumina [733202]
CNVN
Mapped traitresponse to cyclophosphamide, response to antineoplastic agent
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_1902518, http://purl.obolibrary.org/obo/GO_0097327
Study accessionGCST002002