SNP Detail For rs10921219
1.Mapping Information
Human SNP ID rs10921219
Human chromosome chr1
Human SNP position 192618733
Pig chromosome chr10
Pig SNP position 2676096
2.Annotation Information
PubMed ID25866641
JournalBiomark Res
Linkwww.ncbi.nlm.nih.gov/pubmed/25866641
StudyA genome wide association study on Newfoundland colorectal cancer patients__ survival outcomes.
Disease/TraitSurvival in colon cancer
Initial sample334 European ancestry cases
Replication sampleNA
Region1q31.2
Chromosome idchr1
Chromosome position192618733
Reported geneintergenic
Mapped geneLOC105371664
Upstream gene id
Downstream gene id
SNP gene ids105371664
Upstream gene distance
Downstream gene distance
SNP risk allelers10921219-?
SNPsrs10921219
Merged0
SNP id current10921219
Contextintergenic_variant
Intergenic0
Allele frequency
P value0.000004
Pvalue mlog5.39794000867203
P value text(overall survival)
Or beta1.9
%95 Ci[1.44-2.49]
PlatformIllumina [729737]
CNVN
Mapped traitcolonic neoplasm, overall survival
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004288, http://www.ebi.ac.uk/efo/EFO_0000638
Study accessionGCST002822