Human SNP ID | rs10921219 |
---|---|
Human chromosome | chr1 |
Human SNP position | 192618733 |
Pig chromosome | chr10 |
Pig SNP position | 2676096 |
PubMed ID | 25866641 |
---|---|
Journal | Biomark Res |
Link | www.ncbi.nlm.nih.gov/pubmed/25866641 |
Study | A genome wide association study on Newfoundland colorectal cancer patients__ survival outcomes. |
Disease/Trait | Survival in colon cancer |
Initial sample | 334 European ancestry cases |
Replication sample | NA |
Region | 1q31.2 |
Chromosome id | chr1 |
Chromosome position | 192618733 |
Reported gene | intergenic |
Mapped gene | LOC105371664 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105371664 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10921219-? |
SNPs | rs10921219 |
Merged | 0 |
SNP id current | 10921219 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (overall survival) |
Or beta | 1.9 |
%95 Ci | [1.44-2.49] |
Platform | Illumina [729737] |
CNV | N |
Mapped trait | colonic neoplasm, overall survival |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004288, http://www.ebi.ac.uk/efo/EFO_0000638 |
Study accession | GCST002822 |