SNP Detail For rs10920678
1.Mapping Information
Human SNP ID rs10920678
Human chromosome chr1
Human SNP position 190270777
Pig chromosome chr10
Pig SNP position 5008132
2.Annotation Information
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region1q31.1
Chromosome idchr1
Chromosome position190270777
Reported geneFAM5C
Mapped geneLOC105371658, BRINP3
Upstream gene id
Downstream gene id
SNP gene ids105371658, 339479
Upstream gene distance
Downstream gene distance
SNP risk allelers10920678-A
SNPsrs10920678
Merged0
SNP id current10920678
Contextintron_variant
Intergenic0
Allele frequency0.441
P value0.000001
Pvalue mlog6
P value text(EA)
Or beta0.015
%95 Ci[0.0086-0.0208] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region1q31.1
Chromosome idchr1
Chromosome position190270777
Reported geneFAM5C
Mapped geneLOC105371658, BRINP3
Upstream gene id
Downstream gene id
SNP gene ids105371658, 339479
Upstream gene distance
Downstream gene distance
SNP risk allelers10920678-A
SNPsrs10920678
Merged0
SNP id current10920678
Contextintron_variant
Intergenic0
Allele frequency0.439
P value0.0000009
Pvalue mlog6.04575749056067
P value text
Or beta0.014
%95 Ci[0.0087-0.0201] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783