Human SNP ID | rs10920678 |
---|---|
Human chromosome | chr1 |
Human SNP position | 190270777 |
Pig chromosome | chr10 |
Pig SNP position | 5008132 |
PubMed ID | 25673413 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
Study | Genetic studies of body mass index yield new insights for obesity biology. |
Disease/Trait | Body mass index |
Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
Region | 1q31.1 |
Chromosome id | chr1 |
Chromosome position | 190270777 |
Reported gene | FAM5C |
Mapped gene | LOC105371658, BRINP3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105371658, 339479 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10920678-A |
SNPs | rs10920678 |
Merged | 0 |
SNP id current | 10920678 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.441 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (EA) |
Or beta | 0.015 |
%95 Ci | [0.0086-0.0208] kg/m2 increase |
Platform | Affymetrix, Illumina [2550021] |
CNV | N |
Mapped trait | body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002783 |
PubMed ID | 25673413 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
Study | Genetic studies of body mass index yield new insights for obesity biology. |
Disease/Trait | Body mass index |
Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
Region | 1q31.1 |
Chromosome id | chr1 |
Chromosome position | 190270777 |
Reported gene | FAM5C |
Mapped gene | LOC105371658, BRINP3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105371658, 339479 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10920678-A |
SNPs | rs10920678 |
Merged | 0 |
SNP id current | 10920678 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.439 |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | |
Or beta | 0.014 |
%95 Ci | [0.0087-0.0201] kg/m2 increase |
Platform | Affymetrix, Illumina [2550021] |
CNV | N |
Mapped trait | body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002783 |