SNP Detail For rs10918196
1.Mapping Information
Human SNP ID rs10918196
Human chromosome chr1
Human SNP position 165478920
Pig chromosome chr4
Pig SNP position 92977856
2.Annotation Information
PubMed ID22903471
JournalBrain Imaging Behav
Linkwww.ncbi.nlm.nih.gov/pubmed/22903471
StudyGenome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.
Disease/TraitLentiform nucleus volume
Initial sample162 European ancestry Alzheimer__s disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families
Replication sampleNA
Region1q23.3
Chromosome idchr1
Chromosome position165478920
Reported geneLOC400794
Mapped geneLOC400794
Upstream gene id
Downstream gene id
SNP gene ids400794
Upstream gene distance
Downstream gene distance
SNP risk allelers10918196-C
SNPsrs10918196
Merged0
SNP id current10918196
Contextintron_variant
Intergenic0
Allele frequency0.41
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta93.94
%95 Ci[NR] unit increase
PlatformIllumina [2380200] (imputed)
CNVN
Mapped traitlentiform nucleus measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004913
Study accessionGCST001640