SNP Detail For rs10911902
1.Mapping Information
Human SNP ID rs10911902
Human chromosome chr1
Human SNP position 186663185
Pig chromosome chr9
Pig SNP position 140238720
2.Annotation Information
PubMed ID18347602
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/18347602
StudyGenomewide association for schizophrenia in the CATIE study: results of stage 1.
Disease/TraitSchizophrenia
Initial sample417 European ancestry cases, 411 European ancestry controls, 217 African American cases, 219 African American controls, 104 American Indian, Asian, Pacific Islander or Hispanic/Latino ancestry cases, 103 American Indian, Asian, Pacific Islander or Hispani
Replication sampleNA
Region1q31.1
Chromosome idchr1
Chromosome position186663185
Reported geneintergenic
Mapped geneLOC102724919 - PTGS2
Upstream gene id102724919
Downstream gene id5743
SNP gene ids
Upstream gene distance192894
Downstream gene distance8627
SNP risk allelers10911902-?
SNPsrs10911902
Merged0
SNP id current10911902
Contextintergenic_variant
Intergenic1
Allele frequency0.17
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.79
%95 Ci[NR]
PlatformAffymetrix [492900]
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST000164