Human SNP ID | rs10911902 |
---|---|
Human chromosome | chr1 |
Human SNP position | 186663185 |
Pig chromosome | chr9 |
Pig SNP position | 140238720 |
PubMed ID | 18347602 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/18347602 |
Study | Genomewide association for schizophrenia in the CATIE study: results of stage 1. |
Disease/Trait | Schizophrenia |
Initial sample | 417 European ancestry cases, 411 European ancestry controls, 217 African American cases, 219 African American controls, 104 American Indian, Asian, Pacific Islander or Hispanic/Latino ancestry cases, 103 American Indian, Asian, Pacific Islander or Hispani |
Replication sample | NA |
Region | 1q31.1 |
Chromosome id | chr1 |
Chromosome position | 186663185 |
Reported gene | intergenic |
Mapped gene | LOC102724919 - PTGS2 |
Upstream gene id | 102724919 |
Downstream gene id | 5743 |
SNP gene ids | |
Upstream gene distance | 192894 |
Downstream gene distance | 8627 |
SNP risk allele | rs10911902-? |
SNPs | rs10911902 |
Merged | 0 |
SNP id current | 10911902 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.17 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.79 |
%95 Ci | [NR] |
Platform | Affymetrix [492900] |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST000164 |