SNP Detail For rs10906982
1.Mapping Information
Human SNP ID rs10906982
Human chromosome chr15
Human SNP position 83899406
Pig chromosome chr7
Pig SNP position 56634689
2.Annotation Information
PubMed ID20397748
JournalTwin Res Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20397748
StudyGenome-wide association study of height and body mass index in Australian twin families.
Disease/TraitHeight
Initial sample11,536 European ancestry individuals
Replication sampleNA
Region15q25.2
Chromosome idchr15
Chromosome position83899406
Reported geneSH3GL3, ADAMTSL3
Mapped geneADAMTSL3
Upstream gene id
Downstream gene id
SNP gene ids57188
Upstream gene distance
Downstream gene distance
SNP risk allelers10906982-A
SNPsrs10906982
Merged0
SNP id current10906982
Contextintron_variant
Intergenic0
Allele frequency0.52
P value0.0000005
Pvalue mlog6.30102999566398
P value text
Or beta0.07
%95 Ci[0.03-0.11] SD increase
PlatformIllumina [559712] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000644
PubMed ID18391952
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18391952
StudyGenome-wide association analysis identifies 20 loci that influence adult height.
Disease/TraitHeight
Initial sample13,665 European ancestry individuals
Replication sample16,482 European ancestry individuals
Region15q25.2
Chromosome idchr15
Chromosome position83899406
Reported geneADAMTSL3
Mapped geneADAMTSL3
Upstream gene id
Downstream gene id
SNP gene ids57188
Upstream gene distance
Downstream gene distance
SNP risk allelers10906982-A
SNPsrs10906982
Merged0
SNP id current10906982
Contextintron_variant
Intergenic0
Allele frequency0.52
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta0.05
%95 Ci[0.02-0.07] s.d. increase (males)
PlatformAffymetrix [402951]
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000174