SNP Detail For rs10906142
1.Mapping Information
Human SNP ID rs10906142
Human chromosome chr10
Human SNP position 12396784
Pig chromosome chr10
Pig SNP position 65409725
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region10p13
Chromosome idchr10
Chromosome position12396784
Reported geneCAMK1D
Mapped geneCAMK1D
Upstream gene id
Downstream gene id
SNP gene ids57118
Upstream gene distance
Downstream gene distance
SNP risk allelers10906142-A
SNPsrs10906142
Merged0
SNP id current10906142
Contextintron_variant
Intergenic0
Allele frequency0.236
P value0.000004
Pvalue mlog5.39794000867203
P value text(Energy storage )
Or beta0.03
%95 Ci[NR] kcal/d increase
PlatformIllumina [899892]
CNVN
Mapped traitbody composition measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005106
Study accessionGCST001762
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region10p13
Chromosome idchr10
Chromosome position12396784
Reported geneCAMK1D
Mapped geneCAMK1D
Upstream gene id
Downstream gene id
SNP gene ids57118
Upstream gene distance
Downstream gene distance
SNP risk allelers10906142-A
SNPsrs10906142
Merged0
SNP id current10906142
Contextintron_variant
Intergenic0
Allele frequency0.236
P value0.000001
Pvalue mlog6
P value text(Fat mass change )
Or beta0.04
%95 Ci[NR] kg/y increase
PlatformIllumina [899892]
CNVN
Mapped traitbody composition measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005106
Study accessionGCST001762
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region10p13
Chromosome idchr10
Chromosome position12396784
Reported geneCAMK1D
Mapped geneCAMK1D
Upstream gene id
Downstream gene id
SNP gene ids57118
Upstream gene distance
Downstream gene distance
SNP risk allelers10906142-A
SNPsrs10906142
Merged0
SNP id current10906142
Contextintron_variant
Intergenic0
Allele frequency0.236
P value0.000001
Pvalue mlog6
P value text(Fat mass deposition )
Or beta0.04
%95 Ci[NR] kcal/d increase
PlatformIllumina [899892]
CNVN
Mapped traitbody composition measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005106
Study accessionGCST001762