SNP Detail For rs10906115
1.Mapping Information
Human SNP ID rs10906115
Human chromosome chr10
Human SNP position 12272998
Pig chromosome chr10
Pig SNP position 65477981
2.Annotation Information
PubMed ID20862305
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20862305
StudyIdentification of new genetic risk variants for type 2 diabetes.
Disease/TraitType 2 diabetes
Initial sample1,019 Chinese ancestry cases, 1,710 Chinese ancestry controls
Replication sample2,591 European ancestry cases, 3,052 European ancestry controls, 6,184 East Asian cases, 9,853 East Asian controls
Region10p13
Chromosome idchr10
Chromosome position12272998
Reported geneCDC123, CAMK1D
Mapped geneCDC123 - CAMK1D
Upstream gene id8872
Downstream gene id57118
SNP gene ids
Upstream gene distance22408
Downstream gene distance76519
SNP risk allelers10906115-A
SNPsrs10906115
Merged0
SNP id current10906115
Contextintergenic_variant
Intergenic1
Allele frequency0.57
P value0.00000001
Pvalue mlog8
P value text
Or beta1.13
%95 Ci[1.08-1.18]
PlatformAffymetrix [590887]
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST000796