SNP Detail For rs10900020
1.Mapping Information
Human SNP ID rs10900020
Human chromosome chr10
Human SNP position 44331749
Pig chromosome chr14
Pig SNP position 100050101
2.Annotation Information
PubMed ID23212062
JournalAm J Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23212062
StudyGenome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.
Disease/TraitSchizophrenia
Initial sample2,454 European ancestry cases
Replication sampleNA
Region10q11.21
Chromosome idchr10
Chromosome position44331749
Reported geneCXCL12
Mapped geneLOC105378278
Upstream gene id
Downstream gene id
SNP gene ids105378278
Upstream gene distance
Downstream gene distance
SNP risk allelers10900020-?
SNPsrs10900020
Merged0
SNP id current10900020
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text(Positive symptoms)
Or beta0.1536
%95 Ci[NR] unit decrease
PlatformAffymetrix [696491]
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST001757