Human SNP ID | rs10900020 |
---|---|
Human chromosome | chr10 |
Human SNP position | 44331749 |
Pig chromosome | chr14 |
Pig SNP position | 100050101 |
PubMed ID | 23212062 |
---|---|
Journal | Am J Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23212062 |
Study | Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms. |
Disease/Trait | Schizophrenia |
Initial sample | 2,454 European ancestry cases |
Replication sample | NA |
Region | 10q11.21 |
Chromosome id | chr10 |
Chromosome position | 44331749 |
Reported gene | CXCL12 |
Mapped gene | LOC105378278 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105378278 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10900020-? |
SNPs | rs10900020 |
Merged | 0 |
SNP id current | 10900020 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (Positive symptoms) |
Or beta | 0.1536 |
%95 Ci | [NR] unit decrease |
Platform | Affymetrix [696491] |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST001757 |