SNP Detail For rs10896794
1.Mapping Information
Human SNP ID rs10896794
Human chromosome chr11
Human SNP position 58571651
Pig chromosome chr2
Pig SNP position 12205612
2.Annotation Information
PubMed ID23128233
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/23128233
StudyHost-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Disease/TraitInflammatory bowel disease
Initial sample12,924 European ancestry cases, 21,442 European ancestry controls
Replication sample25,683 European ancestry cases, 17,015 European ancestry controls
Region11q12.1
Chromosome idchr11
Chromosome position58571651
Reported geneCNTF, LPXN
Mapped geneLPXN
Upstream gene id
Downstream gene id
SNP gene ids9404
Upstream gene distance
Downstream gene distance
SNP risk allelers10896794-T
SNPsrs10896794
Merged0
SNP id current10896794
Contextintron_variant
Intergenic0
Allele frequency0.762
P value0.0000000007
Pvalue mlog9.15490195998574
P value text
Or beta1.08
%95 Ci[1.045-1.116]
PlatformAffymetrix, Illumina [1230000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST001725