Human SNP ID | rs10896794 |
---|---|
Human chromosome | chr11 |
Human SNP position | 58571651 |
Pig chromosome | chr2 |
Pig SNP position | 12205612 |
PubMed ID | 23128233 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/23128233 |
Study | Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. |
Disease/Trait | Inflammatory bowel disease |
Initial sample | 12,924 European ancestry cases, 21,442 European ancestry controls |
Replication sample | 25,683 European ancestry cases, 17,015 European ancestry controls |
Region | 11q12.1 |
Chromosome id | chr11 |
Chromosome position | 58571651 |
Reported gene | CNTF, LPXN |
Mapped gene | LPXN |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9404 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10896794-T |
SNPs | rs10896794 |
Merged | 0 |
SNP id current | 10896794 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.762 |
P value | 0.0000000007 |
Pvalue mlog | 9.15490195998574 |
P value text | |
Or beta | 1.08 |
%95 Ci | [1.045-1.116] |
Platform | Affymetrix, Illumina [1230000] (imputed) |
CNV | N |
Mapped trait | inflammatory bowel disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003767 |
Study accession | GCST001725 |