SNP Detail For rs10895547
1.Mapping Information
Human SNP ID rs10895547
Human chromosome chr11
Human SNP position 103937424
Pig chromosome chr9
Pig SNP position 38379489
2.Annotation Information
PubMed ID21347282
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21347282
StudyGenome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.
Disease/TraitLDL cholesterol
Initial sample7,565 African American individuals
Replication sample3,789 African American and Afro-Caribbean individuals
Region11q22.3
Chromosome idchr11
Chromosome position103937424
Reported genePDGFD
Mapped genePDGFD
Upstream gene id
Downstream gene id
SNP gene ids80310
Upstream gene distance
Downstream gene distance
SNP risk allelers10895547-T
SNPsrs10895547
Merged0
SNP id current10895547
Contextintron_variant
Intergenic0
Allele frequency0.23
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.0747
%95 Ci[0.043-0.106] unit decrease
PlatformAffymetrix [~ 2740000] (imputed)
CNVN
Mapped traitlow density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004611
Study accessionGCST000975