SNP Detail For rs10883969
1.Mapping Information
Human SNP ID rs10883969
Human chromosome chr10
Human SNP position 104124358
Pig chromosome chr14
Pig SNP position 124985101
2.Annotation Information
PubMed ID23551011
JournalAnn Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23551011
StudyGenome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.
Disease/TraitPreeclampsia
Initial sample21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls
Replication sampleNA
Region10q25.1
Chromosome idchr10
Chromosome position104124358
Reported geneC10orf78
Mapped geneSFR1
Upstream gene id
Downstream gene id
SNP gene ids119392
Upstream gene distance
Downstream gene distance
SNP risk allelers10883969-?
SNPsrs10883969
Merged0
SNP id current10883969
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text(EA)
Or beta2.97
%95 Ci[1.88-4.69]
PlatformIllumina [2485249] (imputed)
CNVN
Mapped traitpreeclampsia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000668
Study accessionGCST001949