SNP Detail For rs10881542
1.Mapping Information
Human SNP ID rs10881542
Human chromosome chr1
Human SNP position 104310116
Pig chromosome chr4
Pig SNP position 125860301
2.Annotation Information
PubMed ID22922875
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22922875
StudyGenome-wide association analyses identify three new susceptibility loci for primary angle closure glaucoma.
Disease/TraitGlaucoma (primary angle closure)
Initial sample1,281 East Asian ancestry cases, 1,987 East Asian ancestry controls, 337 South Indian ancestry cases, 2,538 South Indian ancestry controls, 236 South East Asian ancestry cases, 5,083 South East Asian ancestry controls
Replication sample1,545 East Asian ancestry cases, 3,756 East Asian ancestry controls, 165 Saudi Arabian ancestry cases, 175 Saudi Arabian ancestry controls, 127 European ancestry cases, 4,703 European ancestry controls, 80 Indian ancestry cases, 309 Indian ancestry contro
Region1p21.1
Chromosome idchr1
Chromosome position104310116
Reported geneNR
Mapped geneFTLP17 - LOC105378880
Upstream gene id642337
Downstream gene id105378880
SNP gene ids
Upstream gene distance156079
Downstream gene distance690910
SNP risk allelers10881542-?
SNPsrs10881542
Merged0
SNP id current10881542
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.18
%95 Ci[NR]
PlatformIllumina [493501]
CNVN
Mapped traitglaucoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000516
Study accessionGCST001649