SNP Detail For rs10874639
1.Mapping Information
Human SNP ID rs10874639
Human chromosome chr1
Human SNP position 102668353
Pig chromosome chr4
Pig SNP position 127536588
2.Annotation Information
PubMed ID18464913
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18464913
StudyA genome-wide association study identifies protein quantitative trait loci (pQTLs).
Disease/TraitProtein quantitative trait loci
Initial sample1,200 European ancestry individuals
Replication sampleup to 4,590 European ancestry individuals
Region1p21.1
Chromosome idchr1
Chromosome position102668353
Reported geneCOL11A1
Mapped geneLOC105378874 - LOC105378875
Upstream gene id105378874
Downstream gene id105378875
SNP gene ids
Upstream gene distance7639
Downstream gene distance8425
SNP risk allelers10874639-?
SNPsrs10874639
Merged0
SNP id current10874639
Contextintergenic_variant
Intergenic1
Allele frequency0.12
P value0.000003
Pvalue mlog5.52287874528033
P value text(Fibrinogen)
Or beta
%95 Ci
PlatformIllumina [496032]
CNVN
Mapped traitfibrinogen measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004623
Study accessionGCST000189