SNP Detail For rs10866682
1.Mapping Information
Human SNP ID rs10866682
Human chromosome chr5
Human SNP position 174609230
Pig chromosome chr16
Pig SNP position 54085629
2.Annotation Information
PubMed ID26256467
JournalMetabolism
Linkwww.ncbi.nlm.nih.gov/pubmed/26256467
StudyGenome-wide association study of triglyceride response to a high-fat meal among participants of the NHLBI Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).
Disease/TraitPostprandial triglyceride response to high fat diet meal
Initial sample872 European ancestry individuals
Replication sample843 Old Order Amish individuals
Region5q35.2
Chromosome idchr5
Chromosome position174609230
Reported geneintergenic
Mapped geneLOC105377739 - LOC105377740
Upstream gene id105377739
Downstream gene id105377740
SNP gene ids
Upstream gene distance61117
Downstream gene distance6351
SNP risk allelers10866682-C
SNPsrs10866682
Merged
SNP id current10866682
Contextregulatory_region_variant
Intergenic1
Allele frequency0.1051
P value0.0000006
Pvalue mlog6.22184874961635
P value text(AUI)
Or beta0.4356
%95 Ci[0.27-0.61] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitresponse to high fat food intake, triglyceride change measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007684, http://www.ebi.ac.uk/efo/EFO_0007681
Study accessionGCST003014
PubMed ID26256467
JournalMetabolism
Linkwww.ncbi.nlm.nih.gov/pubmed/26256467
StudyGenome-wide association study of triglyceride response to a high-fat meal among participants of the NHLBI Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).
Disease/TraitPostprandial triglyceride response to high fat diet meal
Initial sample872 European ancestry individuals
Replication sample843 Old Order Amish individuals
Region5q35.2
Chromosome idchr5
Chromosome position174609230
Reported geneintergenic
Mapped geneLOC105377739 - LOC105377740
Upstream gene id105377739
Downstream gene id105377740
SNP gene ids
Upstream gene distance61117
Downstream gene distance6351
SNP risk allelers10866682-C
SNPsrs10866682
Merged
SNP id current10866682
Contextregulatory_region_variant
Intergenic1
Allele frequency0.1052
P value0.0000005
Pvalue mlog6.30102999566398
P value text(Uptake slope)
Or beta0.4323
%95 Ci[0.26-0.6] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitresponse to high fat food intake, triglyceride change measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007684, http://www.ebi.ac.uk/efo/EFO_0007681
Study accessionGCST003014