SNP Detail For rs10865541
1.Mapping Information
Human SNP ID rs10865541
Human chromosome chr2
Human SNP position 3388304
Pig chromosome chr3
Pig SNP position 140564416
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region2p25.3
Chromosome idchr2
Chromosome position3388304
Reported geneTTC15/TRAPPC12
Mapped geneTRAPPC12
Upstream gene id
Downstream gene id
SNP gene ids51112
Upstream gene distance
Downstream gene distance
SNP risk allelers10865541-A
SNPsrs10865541
Merged0
SNP id current10865541
Contextmissense_variant
Intergenic0
Allele frequency0.488
P value0.000006
Pvalue mlog5.22184874961635
P value text(Testosterone )
Or beta0.03
%95 Ci[NR] ng/mL increase
PlatformIllumina [899892]
CNVN
Mapped traittestosterone measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004908
Study accessionGCST001762