Human SNP ID | rs10865035 |
---|---|
Human chromosome | chr2 |
Human SNP position | 100219272 |
Pig chromosome | chr3 |
Pig SNP position | 56656815 |
PubMed ID | 20453842 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20453842 |
Study | Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | 5,539 European ancestry cases, 20,169 European ancestry controls |
Replication sample | 6,768 European ancestry cases, 8,806 European ancestry controls |
Region | 2q11.2 |
Chromosome id | chr2 |
Chromosome position | 100219272 |
Reported gene | AFF3 |
Mapped gene | LINC01104 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 150577 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10865035-A |
SNPs | rs10865035 |
Merged | 0 |
SNP id current | 10865035 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.47 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.12 |
%95 Ci | [1.07-1.17] |
Platform | Affymetrix, Illumina [~ 2716259] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST000679 |