SNP Detail For rs10865035
1.Mapping Information
Human SNP ID rs10865035
Human chromosome chr2
Human SNP position 100219272
Pig chromosome chr3
Pig SNP position 56656815
2.Annotation Information
PubMed ID20453842
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20453842
StudyGenome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.
Disease/TraitRheumatoid arthritis
Initial sample5,539 European ancestry cases, 20,169 European ancestry controls
Replication sample6,768 European ancestry cases, 8,806 European ancestry controls
Region2q11.2
Chromosome idchr2
Chromosome position100219272
Reported geneAFF3
Mapped geneLINC01104
Upstream gene id
Downstream gene id
SNP gene ids150577
Upstream gene distance
Downstream gene distance
SNP risk allelers10865035-A
SNPsrs10865035
Merged0
SNP id current10865035
Contextintron_variant
Intergenic0
Allele frequency0.47
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.12
%95 Ci[1.07-1.17]
PlatformAffymetrix, Illumina [~ 2716259] (imputed)
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST000679